Many users reported that exe files keep deleting themselves on their PC. This is a strange problem, and in today’s article we’ll show you how to fix this issue.

There are many issues with exe files that can appear on your PC, and speaking of exe issues, here are some common problems that users reported:

  • Exe files automatically deleted, being deleted, deleted after download, disappearing, missing, getting deleted – These are some common problems with exe files, and in most cases, you can fix them simply by checking your antivirus settings.
  • Exe file disappears after double clicking, delete itself – Sometimes this problem can appear if you don’t have administrative privileges. To fix the problem, run the exe file as an administrator and check if that helps.
  • Windows 10 deletes exe files – Sometimes this issue can appear due to certain glitches. To fix them, switch to Safe Mode and check if the problem is still there.

Exe files keep deleting themselves, what to do?


  1. Check your antivirus
  2. Try using Safe Mode
  3. Try running the application as an administrator
  4. Create a new user account
  5. Use a different file archiver
  6. Install the missing updates
  7. Perform Clean Boot
  8. Perform an in-place upgrade

Solution 1 – Check your antivirus

Exe files automatically deleted

If you’re having this problem, be sure to scan your PC for malware. Sometimes malware can infect your PC and start removing exe files on its own. To be sure that your PC is not infected, perform a full system scan.

If your PC isn’t infected, the problem might be your antivirus settings. If your antivirus keeps removing certain exe file, add that file to the list of exceptions and check if that helps. Alternatively, you can try disabling certain antivirus features or even disable your antivirus altogether.

If that doesn’t work, perhaps you should uninstall your third-party antivirus. Even if you choose to do so, you’ll still be protected by Windows Defender, so there’s no need to worry about your safety. Users reported problems with Norton and Malwarebytes, but bear in mind that other antivirus tools can cause this problem to appear.

If removing the antivirus solves the problem, perhaps you should consider switching to a different antivirus solution. There are many great antivirus tools on the market, but if you’re looking for a reliable antivirus that won’t interfere with your system, we recommend that you try Bitdefender.

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Solution 2 – Try using Safe Mode

If exe files are deleting themselves, the issue might be related to your settings or third-party applications. In order to troubleshoot the problem, it’s advised to enter Safe Mode and check if the problem appears there. To do that, follow these steps:

  1. Open the Settings app by using Windows Key + I shortcut.
  2. When the Settings app opens, head over to the Update & Security section.
    Exe files deleted after download
  3. Select Recovery from the left pane. In the right pane, click the Restart now button.
    Windows 10 deletes exe files
  4. Select Troubleshoot > Advanced options > Startup Settings. Now click the Restart button.
  5. You should now see a list of options. Select the version of Safe Mode you want to use by pressing the corresponding keyboard key.

Once you enter Safe Mode, check if the problem is still there. If the issue doesn’t appear, you can start troubleshooting it. Some users are suggesting to copy or extract the file while you’re in Safe Mode, so you can do that as well.


Solution 3 – Try running the application as an administrator

If exe files keep deleting themselves, the issue might be the lack of administrative privileges. Several users reported that they fixed the problem simply by running the exe file as an administrator. This is simple to do, and you can do it by following these steps:

  1. Locate the problematic application.
  2. Right-click the exe file and choose Run as administrator from the menu.

If this solves your problem, you’ll need to repeat this process every time you want to run that exe file. Alternatively, you can force the application to always run with administrative privileges. To do that, follow these steps:

  1. Right-click the problematic exe file and choose Properties from the menu.
    Exe file disappears after double clicking
  2. Head over to the Compatibility tab and check Run this program as an administrator option. Now click Apply and OK to save changes.
    Exe file disappears after double clicking

After doing that, the application will always start with administrative privileges and the problem should be permanently resolved.


Solution 4 – Create a new user account

If exe files keep deleting themselves, the issue might be your user account. Sometimes your account can get corrupted, and since there’s no easy way to fix it, it’s recommended to create a new user account. This is fairly simple to do, and you can do it by following these steps:

  1. Open the Settings app and navigate to the Accounts section.
  2. Select Family & other people from the left pane. Choose Add someone else to this PC from the right pane.
    Exe files being deleted
  3. Select I don’t have this person’s sign-in information > Add a user without a Microsoft account.
  4. Now you just have to enter the username for the new account and click Next.
    Windows 10 deletes exe files

After creating a new user account, switch to it and check if the problem is resolved. If the issue isn’t present on the new account, move your personal files to it and start using it instead of your old account.


Solution 5 – Use a different file archiver

Some users reported that exe files are deleting themselves when you extract them from a zip archive. This problem usually appears when using a built-in archiver tool in Windows, and in order to avoid it, users are recommending to switch to a third-party archiver such as WinRAR.

After switching to a third-party file archiver, the issue should be completely resolved.


Solution 6 – Install the missing updates

If exe files are deleting themselves, the issue might be related to missing updates. Sometimes glitches in Windows can appear, but they are usually fixed via Windows Update. Windows will automatically download and install missing updates, but if you want, you can check for updates on your own. To do that, just follow these steps:

  1. Open the Settings app and navigate to the Update & Security section.
  2. Now in the right pane click the Check for updates button.
    Exe file delete itself

Windows will check for available updates and download them in the background. Once the updates are installed, check if the problem is still there.


Solution 7 – Perform Clean Boot

Sometimes these types of problems can occur due to third-party applications. Some applications tend to start automatically with Windows, and they can cause exe files to delete themselves. To fix this problem, users are suggesting to perform a Clean boot and disable all startup applications. To do that, just follow these steps:

  1. Press Windows Key + R to open the Run dialog. Now type msconfig and click OK or press Enter.
    Exe file disappears after double clicking
  2. System Configuration window will open. Navigate to the Services tab and check Hide all Microsoft services checkbox. Click the Disable all button to disable all available services.
    Exe files automatically disappearing
  3. After doing that, navigate to the Startup tab and click Open Task Manager.
  4. When Task Manager opens, you should see a list of startup applications. Right-click the first application on the list and pick Disable from the menu. Do this for all applications on the list.
    Windows 10 deletes exe files
  5. Once you disable all startup applications, go back to the System Configuration window. Now click Apply and OK and restart your PC.

After your PC restarts, check if the problem is still there. If not, it’s certain that one of the disabled applications or services was causing the issue. To find the root cause, enable disabled services and applications one by one or in groups. Keep in mind that you’ll need to restart your PC after enabling an application or service in order to apply changes.

Once you find the cause of the problem, remove the application using an uninstaller software such as IOBit Uninstaller.


Solution 8 – Perform an in-place upgrade

If you keep having this problem with exe files, perhaps your installation is corrupted and you need to repair it. You can repair your installation and keep all your files by performing an in-place upgrade. To do that, just follow these steps:

  1. Download and run Media Creation Tool.
  2. When Media Creation Tool starts, select Upgrade this PC now and click Next.
  3. Choose Download and install updates (recommended) and click Next.
  4. Now follow the instructions on the screen. Once you reach Ready to install screen select Change what to keep.
  5. Select Keep personal files and apps option and click Next.
  6. Follow the instructions on the screen to complete the upgrade.

After you complete the upgrade, you’ll have a fresh installation of Windows installed, and all your files and applications should remain intact. If the problem is still there, your next step would be to perform a Windows 10 reset.

Exe files that keep deleting themselves can be a problem, but we hope that you managed to fix this problem with one of our solutions.

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